mcp-nextflow
Nextflow development tools MCP for FastMCP. mcp-nextflow is a Model Context Protocol (MCP) server maintained by adamrtalbot. It connects to MCP-compatible clients such as Claude Desktop, Cursor, Cline, and other agents that speak the protocol. It is categorized under Tool/Developer, Development/Workflow and Integration/Claude.
What is this MCP
This is a Model Context Protocol (MCP) server designed specifically for Nextflow development and testing. It provides tools for building Nextflow from source, running tests, managing the development environment, and accessing documentation.
How to use this MCP
Install via FastMCP CLI (pip install fastmcp) and configure with your local Nextflow repository path. The MCP can be used through Claude Desktop or Cursor IDE by selecting it from the tools menu or referencing it in chat commands.
What this MCP can be used for
Primarily for Nextflow core development tasks like running integration tests, plugin tests, building from source, and managing the development environment. It's specifically designed for Nextflow contributors, not pipeline authors.
AIMCP authority
DR and traffic signal for the AIMCP public domain.
Frequently asked questions
What is the mcp-nextflow MCP server?
mcp-nextflow is a Model Context Protocol server from adamrtalbot. It lets MCP-compatible AI clients call its tools over a standard interface, so agents like Claude, Cursor, and Cline can use it without custom integration.
How do I connect mcp-nextflow to my AI client?
Add mcp-nextflow to your client's MCP configuration using the stdio or SSE connection shown in the usage examples on this page, then restart the client to load the server.
Is mcp-nextflow free to use?
mcp-nextflow is listed on AIMCP for free. Any API keys or accounts required by the underlying service are set by its provider.
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