samtools_mcp
用于基因组文件处理的SAMtools MCP. samtools_mcp is a Model Context Protocol (MCP) server maintained by sirusb. It connects to MCP-compatible clients such as Claude Desktop, Cursor, Cline, and other agents that speak the protocol. It exposes 8 tools, including view, sort, index, merge, depth, flagstat, idxstats and faidx, that an agent can call directly. It is categorized under Tool/Docker and Tool/CLI.
什么是这个MCP
该MCP为处理SAM/BAM/CRAM基因组比对文件提供了标准化接口，支持格式转换、排序、索引和统计分析功能。
如何使用这个MCP
推荐通过Docker使用该MCP，也支持本地安装。它提供了Python方法用于常见操作，如比对文件的view查看、sort排序、index索引建立以及depth深度计算。
这个MCP的用途
该MCP使基因组研究人员能够通过编程方式处理比对文件，包括格式转换、特定区域分析、读取过滤以及为SAM/BAM/CRAM文件生成全面的统计数据。
AIMCP authority
DR and traffic signal for the AIMCP public domain.
Frequently asked questions
What is the samtools_mcp MCP server?
samtools_mcp is a Model Context Protocol server from sirusb. It lets MCP-compatible AI clients call its tools over a standard interface, so agents like Claude, Cursor, and Cline can use it without custom integration.
How do I connect samtools_mcp to my AI client?
Add samtools_mcp to your client's MCP configuration using the stdio or SSE connection shown in the usage examples on this page, then restart the client to load the server.
What tools does samtools_mcp provide?
samtools_mcp provides 8 tools: view, sort, index, merge, depth, flagstat, idxstats and faidx.
Is samtools_mcp free to use?
samtools_mcp is listed on AIMCP for free. Any API keys or accounts required by the underlying service are set by its provider.
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